PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G077400.1
Common NamePHAVU_006G077400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22547 Da    PI: 9.9827
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G077400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.1e-171151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+s+r++t+ kR++g++KK +E+S+LC++e + ii+s++
  Phvul.006G077400.1 11 ITNDSKRKTTLKKRKHGLIKKMNEISTLCGIESCAIIYSPN 51
                        89*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.54151IPR002100Transcription factor, MADS-box
CDDcd002667.80E-20285No hitNo description
SuperFamilySSF554552.09E-22394IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MARKKLDLTY ITNDSKRKTT LKKRKHGLIK KMNEISTLCG IESCAIIYSP NDPQPEVWPS  60
ESEVQRVLSK FMEMSEQKQS RKMLNQESLL KQIIIKSQQQ LTRQRNENRK KEMTHLMFQY  120
LSIGKVFDNP SLIDLNDLSW LIDQNLNEIK KKMTMIQIQE VSSVTENGGE HGFMHHVQGR  180
ESKIDTLRSN IDP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKLDLTYITNDSKRKTTLKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146871.11e-141hypothetical protein PHAVU_006G077400g
SwissprotQ9FJK34e-45AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV7BP861e-141V7BP86_PHAVU; Uncharacterized protein
STRINGGLYMA18G06040.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-40AGAMOUS-like 80